On average, our predoctoral trainees publish 1 article within the length of their training at UCLA while our postdoctoral trainees publish 3 articles.
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“Comprehensive cell type decomposition of circulating cell-free DNA with CelFiE” in Nature Communications
(2018-20 Trainee Christa Caggiano,
1st author)
Read
“Brain gene co-expression networks link complement signaling with convergent synaptic pathology in schizophrenia” in Nature Neuroscience
(2019-21 Trainee Minsoo Kim, 1st author)
Publications by Predoctoral Trainees
Kim M, Haney JR, Zhang P, Hernandez LM, Wang LK, Perez-Cano L, Loohuis LMO, de la Torre-Ubieta L, Gandal MJ. Brain gene co-expression networks link complement signaling with convergent synaptic pathology in schizophrenia. Nat Neurosci. 2021 Jun;24(6):799-809. doi: 10.1038/s41593-021-00847-z. Epub 2021 May 6. PMID: 33958802; PMCID: PMC8178202. |
Caggiano C, Celona B, Garton F, Mefford J, Black BL, Henderson R, Lomen-Hoerth C, Dahl A, Zaitlen N. Comprehensive cell type decomposition of circulating cell-free DNA with CelFiE. Nat Commun. 2021 May 11;12(1):2717. doi: 10.1038/s41467-021-22901-x. PMID: 33976150; PMCID: PMC8113516. |
Van Paemel R, De Koker A, Caggiano C, Morlion A, Mestdagh P, De Wilde B, Vandesompele J, De Preter K. Genome-wide study of the effect of blood collection tubes on the cell-free DNA methylome. Epigenetics. 2021 Jun-Jul;16(7):797-807. doi: 10.1080/15592294.2020.1827714. Epub 2020 Oct 19. PMID: 33074045; PMCID: PMC8216177. |
Service SK, Vargas Upegui C, Castaño Ramírez M, Port AM, Moore TM, Munoz Umanes M, Agudelo Arango LG, Díaz-Zuluaga AM, Melo Espejo J, López MC, Palacio JD, Ruiz Sánchez S, Valencia J, Teshiba TM, Espinoza A, Olde Loohuis L, De la Hoz Gomez J, Brodey BB, Sabatti C, Escobar JI, Reus VI, Lopez Jaramillo C, Gur RC, Bearden CE, Freimer NB. Distinct and shared contributions of diagnosis and symptom domains to cognitive performance in severe mental illness in the Paisa population: a case-control study. Lancet Psychiatry. 2020 May;7(5):411-419. doi: 10.1016/S2215-0366(20)30098-5. PMID: 32353276. |
Cantor RM, Navarro L, Won H, Walker RL, Lowe JK, Geschwind DH. |
Walker RL, Ramaswami G, Hartl C, Mancuso N, Gandal MJ, de la Torre-Ubieta L, Pasaniuc B, Stein JL, Geschwind DH. Genetic Control of Expression and Splicing in Developing Human Brain Informs Disease Mechanisms. Cell. 2019 Oct 17;179(3):750-771.e22. doi: 10.1016/j.cell.2019.09.021. PMID: 31626773. PMCID in progress\ |
Freund MK, Burch KS, Shi H, Mancuso N, Kichaev G, Garske KM, Pan DZ, Miao Z, Mohlke KL, Laakso M, Pajukanta P, Pasaniuc B, Arboleda VA. Phenotype-Specific Enrichment of Mendelian Disorder Genes near GWAS Regions across 62 Complex Traits. Am J Hum Genet. 2018 Oct 4;103(4):535-552. doi: 10.1016/j.ajhg.2018.08.017. PMID: 30290150; PMCID: PMC6174356. |
Li J, Khankan RR, Caneda C, Godoy MI, Haney MS, Krawczyk MC, Bassik MC, Sloan SA, Zhang Y. Astrocyte-to-astrocyte contact and a positive feedback loop of growth factor signaling regulate astrocyte maturation. Version 2. Glia. 2019 Aug;67(8):1571-1597. doi: 10.1002/glia.23630. Epub 2019 Apr 29. PMID: 31033049; PMCID: PMC6557696. |
Zou J, Hormozdiari F, Jew B, Castel SE, Lappalainen T, Ernst J, Sul JH, Eskin E. Leveraging allelic imbalance to refine fine-mapping for eQTL studies. PLoS Genet. 2019 Dec 13;15(12):e1008481. doi: 10.1371/journal.pgen.1008481. PMID: 31834882; PMCID: PMC6952111. |
Cooke EK, White SA. Learning in the time of COVID: insights from the zebra finch – a social vocal-learner. Curr Opin Neurobiol. 2021 Jun;68:84-90. doi: 10.1016/j.conb.2021.01.004. Epub 2021 Feb 8. PMID: 33571938. |
Lin A, Ching CRK, Vajdi A, Sun D, Jonas RK, Jalbrzikowski M, Kushan-Wells L, Pacheco Hansen L, Krikorian E, Gutman B, Dokoru D, Helleman G, Thompson PM, Bearden CE. Mapping 22q11.2 Gene Dosage Effects on Brain Morphometry. J Neurosci. 2017 Jun 28;37(26):6183-6199. doi: 10.1523/JNEUROSCI.3759-16.2017. Epub 2017 May 23. PMID: 28536274; PMCID: PMC6705695. |
Frohlich J, Senturk D, Saravanapandian V, Golshani P, Reiter LT, Sankar R, Thibert RL, DiStefano C, Huberty S, Cook EH, Jeste SS. A Quantitative Electrophysiological Biomarker of Duplication 15q11.2-q13.1 Syndrome. PLoS One. 2016 Dec 15;11(12):e0167179. doi: 10.1371/journal.pone.0167179. PMID: 27977700; PMCID: PMC5157977. |
Akin O, Bajar BT, Keles MF, Frye MA, Zipursky SL. Cell-type-Specific Patterned Stimulus-Independent Neuronal Activity in the Drosophila Visual System during Synapse Formation. Neuron. 2019 Mar 6;101(5):894-904.e5. doi: 10.1016/j.neuron.2019.01.008. Epub 2019 Jan 30. PMID: 30711355; PMCID: PMC6437771. |
Burkett ZD, Day NF, Kimball TH, Aamodt CM, Heston JB, Hilliard AT, Xiao X, White SA. FoxP2 isoforms delineate spatiotemporal transcriptional networks for vocal learning in the zebra finch. Elife. 2018 Jan 23;7:e30649. doi: 10.7554/eLife.30649. PMID: 29360038; PMCID: PMC5826274. |
Aamodt CM, Farias-Virgens M, White SA. Birdsong as a window into language origins and evolutionary neuroscience. Philos Trans R Soc Lond B Biol Sci. 2020 Jan 6;375(1789):20190060. doi: 10.1098/rstb.2019.0060. Epub 2019 Nov 18. Erratum in: Philos Trans R Soc Lond B Biol Sci. 2020 Mar 2;375(1793):20190748. PMID: 31735151; PMCID: PMC6895547. |
Tuosto K, Johnston JT, Connolly C, Lo C, Sanganyado E, Winter KA, Roembke T, Richter WE, Isaacson KJ, Raitor M, Kosanic A, Bessone L, Heim AB, Srivastava P, Hughes PW, Aamodt CM. Making science accessible. Science. 2020 Jan 3;367(6473):34-35. doi: 10.1126/science.aba6129. PMID: 31896709. |
Aamodt CM, Farias-Virgens M, White SA. Correction to ‘Birdsong as a window into language origins and evolutionary neuroscience’. Philos Trans R Soc Lond B Biol Sci. 2020 Mar 2;375(1793):20190748. doi: 10.1098/rstb.2019.0748. Epub 2020 Jan 13. Erratum for: Philos Trans R Soc Lond B Biol Sci. 2020 Jan 6;375(1789):20190060. PMID: 31928184; PMCID: PMC7017427. |
Douglas PK, Gutman B, Anderson A, Larios C, Lawrence KE, Narr K, Sengupta B, Cooray G, Douglas DB, Thompson PM, McGough JJ, Bookheimer SY. Hemispheric brain asymmetry differences in youths with attention-deficit/hyperactivity disorder. Neuroimage Clin. 2018 Feb 24;18:744-752. doi: 10.1016/j.nicl.2018.02.020. PMID: 29876263; PMCID: PMC5988460. |
Rangaprakash D, Bohon C, Lawrence KE, Moody T, Morfini F, Khalsa SS, Strober M, Feusner JD. Aberrant Dynamic Connectivity for Fear Processing in Anorexia Nervosa and Body Dysmorphic Disorder. Front Psychiatry. 2018 Jun 26;9:273. doi: 10.3389/fpsyt.2018.00273. PMID: 29997532; PMCID: PMC6028703. |
Lawrence KE, Hernandez LM, Bookheimer SY, Dapretto M. Atypical longitudinal development of functional connectivity in adolescents with autism spectrum disorder. Autism Res. 2019 Jan;12(1):53-65. doi: 10.1002/aur.1971. Epub 2018 Oct 30. PMCID: PMC6325013. |
Green SA, Hernandez L, Lawrence KE, Liu J, Tsang T, Yeargin J, Cummings K, Laugeson E, Dapretto M, Bookheimer SY. Distinct Patterns of Neural Habituation and Generalization in Children and Adolescents With Autism With Low and High Sensory Overresponsivity. Am J Psychiatry. 2019 Dec 1;176(12):1010-1020. doi: 10.1176/appi.ajp.2019.18121333. Epub 2019 Jun 24. PMID: 31230465; PMCID: PMC6889004. |
Hernandez LM, Lawrence KE, Padgaonkar NT, Inada M, Hoekstra JN, Lowe JK, Eilbott J, Jack A, Aylward E, Gaab N, Van Horn JD, Bernier RA, McPartland JC, Webb SJ, Pelphrey KA, Green SA, Geschwind DH, Bookheimer SY, Dapretto M. Imaging-genetics of sex differences in ASD: distinct effects of OXTR variants on brain connectivity. Transl Psychiatry. 2020 Mar 3;10(1):82. doi: 10.1038/s41398-020-0750-9. PMID: 32127526. PMCID: PMC7054353. |
Hernandez LM, Green SA, Lawrence KE, Inada M, Liu J, Bookheimer SY, Dapretto M. Social Attention in Autism: Neural Sensitivity to Speech Over Background Noise Predicts Encoding of Social Information. Front Psychiatry. 2020 Apr 24;11:343. doi: 10.3389/fpsyt.2020.00343. eCollection 2020. PMID: 32390890. PMCID: PMC7194032. |
Lawrence KE, Hernandez LM, Eilbott J, Jack A, Aylward E, Gaab N, Van Horn JD, Bernier RA, Geschwind DH, McPartland JC, Nelson CA, Webb SJ, Pelphrey KA, Bookheimer SY, Dapretto M. Neural responsivity to social rewards in autistic female youth. Transl Psychiatry. 2020 Jun 2;10(1):178. doi: 10.1038/s41398-020-0824-8. PMID: 32488083. PMCID: PMC7266816. |
Frohlich J, Van Horn JD. Reviewing the ketamine model for schizophrenia. J Psychopharmacol. 2014 Apr;28(4):287-302. doi: 10.1177/0269881113512909. Epub 2013 Nov 20. PMID: 24257811; PMCID: PMC4133098. |
Frohlich J, Irimia A, Jeste SS. Trajectory of frequency stability in typical |
Jeste SS, Frohlich J, Loo SK. Electrophysiological biomarkers of diagnosis and outcome in neurodevelopmental disorders. Curr Opin Neurol. 2015 Apr;28(2):110-6. doi: 10.1097/WCO.0000000000000181. PMID: 25710286. |
Mohammad-Rezazadeh I, Frohlich J, Loo SK, Jeste SS. Brain connectivity in autism spectrum disorder. Curr Opin Neurol. 2016 Apr;29(2):137-47. doi: |
Frohlich J, Senturk D, Saravanapandian V, Golshani P, Reiter LT, Sankar R, Thibert RL, DiStefano C, Huberty S, Cook EH, Jeste SS. A Quantitative Electrophysiological Biomarker of Duplication 15q11.2-q13.1 Syndrome. PLoS One. 2016 Dec 15;11(12):e0167179. doi: 10.1371/journal.pone.0167179. PMID: 27977700; PMCID: PMC5157977. |
Frohlich J, Miller MT, Bird LM, Garces P, Purtell H, Hoener MC, Philpot BD, Sidorov MS, Tan WH, Hernandez MC, Rotenberg A, Jeste SS, Krishnan M, Khwaja O, Hipp JF. Electrophysiological Phenotype in Angelman Syndrome Differs Between Genotypes. Biol Psychiatry. 2019 May 1;85(9):752-759. doi: 10.1016/j.biopsych.2019.01.008. Epub 2019 Jan 19. PMID: 30826071; PMCID: PMC6482952. |
Frohlich J, Reiter LT, Saravanapandian V, DiStefano C, Huberty S, Hyde C, Chamberlain S, Bearden CE, Golshani P, Irimia A, Olsen RW, Hipp JF, Jeste SS. Mechanisms underlying the EEG biomarker in Dup15q syndrome. Mol Autism. 2019 Jul 3;10:29. doi: 10.1186/s13229-019-0280-6. Erratum in: Mol Autism. 2019 Nov 6;10:37. PMID: 31312421; PMCID: PMC6609401. |
Trinder M, DeCastro ML, Azizi H, Cermakova L, Jackson LM, Frohlich J, Mancini GBJ, Francis GA, Brunham LR. Ascertainment Bias in the Association Between Elevated Lipoprotein(a) and Familial Hypercholesterolemia. J Am Coll Cardiol. 2020 Jun 2;75(21):2682-2693. doi: 10.1016/j.jacc.2020.03.065. PMID: 32466883; PMCID pending. |
Swartz EW, Baek J, Pribadi M, Wojta KJ, Almeida S, Karydas A, Gao FB, Miller BL, Coppola G. A Novel Protocol for Directed Differentiation of C9orf72-Associated Human Induced Pluripotent Stem Cells Into Contractile Skeletal Myotubes. Stem Cells Transl Med. 2016 Nov;5(11):1461-1472. doi: 10.5966/sctm.2015-0340. Epub 2016 Jul 1. PMID: 27369896; PMCID: PMC5070503. |
Das R, Melo JA, Thondamal M, Morton EA, Cornwell AB, Crick B, Kim JH, Swartz EW, Lamitina T, Douglas PM, Samuelson AV. The homeodomain-interacting protein kinase HPK-1 preserves protein homeostasis and longevity through master regulatory control of the HSF-1 chaperone network and TORC1-restricted autophagy in Caenorhabditis elegans. PLoS Genet. 2017 Oct 16;13(10):e1007038. doi: 10.1371/journal.pgen.1007038. PMID: 29036198; PMCID: PMC5658188. |
Rudie JD, Shehzad Z, Hernandez LM, Colich NL, Bookheimer SY, Iacoboni M, Dapretto M. Reduced functional integration and segregation of distributed neural systems underlying social and emotional information processing in autism spectrum disorders. Cereb Cortex. 2012 May;22(5):1025-37. doi: 10.1093/cercor/bhr171. Epub 2011 Jul 22. PMID: 21784971; PMCID: PMC3328339. |
Rudie JD, Hernandez LM, Brown JA, Beck-Pancer D, Colich NL, Gorrindo P, Thompson PM, Geschwind DH, Bookheimer SY, Levitt P, Dapretto M. Autism-associated promoter variant in MET impacts functional and structural brain networks. Neuron. 2012 Sep 6;75(5):904-15. doi: 10.1016/j.neuron.2012.07.010. PMID: 22958829; PMCID: PMC3454529. |
Rudie JD, Brown JA, Beck-Pancer D, Hernandez LM, Dennis EL, Thompson PM, Bookheimer SY, Dapretto M. Altered functional and structural brain network organization in autism. Neuroimage Clin. 2012 Nov 16;2:79-94. doi: 10.1016/j.nicl.2012.11.006. PMID: 24179761; PMCID: PMC3777708. |
Colich NL, Wang AT, Rudie JD, Hernandez LM, Bookheimer SY, Dapretto M. Atypical Neural Processing of Ironic and Sincere Remarks in Children and Adolescents with Autism Spectrum Disorders. Metaphor Symb. 2012;27(1):70-92. doi: 10.1080/10926488.2012.638856. PMID: 24497750; PMCID: PMC3909704. |
Pfeifer JH, Merchant JS, Colich NL, Hernandez LM, Rudie JD, Dapretto M. Neural and behavioral responses during self-evaluative processes differ in youth with and without autism. J Autism Dev Disord. 2013 Feb;43(2):272-85. doi: 10.1007/s10803-012-1563-3. PMID: 22760337; PMCID: PMC3507334. |
Green SA, Rudie JD, Colich NL, Wood JJ, Shirinyan D, Hernandez L, Tottenham N, Dapretto M, Bookheimer SY. Overreactive brain responses to sensory stimuli in youth with autism spectrum disorders. J Am Acad Child Adolesc Psychiatry. 2013 Nov;52(11):1158-72. doi: 10.1016/j.jaac.2013.08.004. Epub 2013 Aug 24. PMID: 24157390; PMCID: PMC3820504. |
Moses P, Hernandez LM, Orient E. Age-related differences in cerebral blood flow underlie the BOLD fMRI signal in childhood. Front Psychol. 2014 Apr 16;5:300. doi: 10.3389/fpsyg.2014.00300. PMID: 24795666; PMCID: PMC3997021. |
Hernandez LM, Rudie JD, Green SA, Bookheimer S, Dapretto M. Neural signatures of autism spectrum disorders: insights into brain network dynamics. Neuropsychopharmacology. 2015 Jan;40(1):171-89. doi: 10.1038/npp.2014.172. Epub 2014 Jul 11. PMID: 25011468; PMCID: PMC4262896. |
Green SA, Hernandez L, Tottenham N, Krasileva K, Bookheimer SY, Dapretto M. Neurobiology of Sensory Overresponsivity in Youth With Autism Spectrum Disorders. JAMA Psychiatry. 2015 Aug;72(8):778-86. doi: 10.1001/jamapsychiatry.2015.0737. PMID: 26061819; PMCID: PMC4861140. |
Jann K, Hernandez LM, Beck-Pancer D, McCarron R, Smith RX, Dapretto M, Wang DJ. Altered resting perfusion and functional connectivity of default mode network in youth with autism spectrum disorder. Brain Behav. 2015 Sep;5(9):e00358. doi: 10.1002/brb3.358. Epub 2015 Jun 25. PMID: 26445698; PMCID: PMC4589806. |
Sherman LE, Payton AA, Hernandez LM, Greenfield PM, Dapretto M. The Power of the Like in Adolescence: Effects of Peer Influence on Neural and Behavioral Responses to Social Media. Version 2. Psychol Sci. 2016 Jul;27(7):1027-35. doi: 10.1177/0956797616645673. Epub 2016 May 31. PMID: 27247125; PMCID: PMC5387999. |
Hernandez LM, Krasileva K, Green SA, Sherman LE, Ponting C, McCarron R, Lowe JK, Geschwind DH, Bookheimer SY, Dapretto M. Additive effects of oxytocin receptor gene polymorphisms on reward circuitry in youth with autism. Mol Psychiatry. 2017 Aug;22(8):1134-1139. doi: 10.1038/mp.2016.209. Epub 2016 Nov 15. PMID: 27843152; PMCID: PMC5991611. |
Green SA, Hernandez LM, Bowman HC, Bookheimer SY, Dapretto M. Sensory over-responsivity and social cognition in ASD: Effects of aversive sensory stimuli and attentional modulation on neural responses to social cues. Version 2. Dev Cogn Neurosci. 2018 Jan;29:127-139. doi: 10.1016/j.dcn.2017.02.005. Epub 2017 Feb 21. PMID: 28284787; PMCID: PMC5990012. |
Green SA, Hernandez L, Bookheimer SY, Dapretto M. Reduced modulation of thalamocortical connectivity during exposure to sensory stimuli in ASD. Autism Res. 2017 May;10(5):801-809. doi: 10.1002/aur.1726. Epub 2016 Nov 29. PMID: 27896947; PMCID: PMC5444966. |
Sherman LE, Greenfield PM, Hernandez LM, Dapretto M. Peer Influence Via Instagram: Effects on Brain and Behavior in Adolescence and Young Adulthood. Child Dev. 2018 Jan;89(1):37-47. doi: 10.1111/cdev.12838. Epub 2017 Jun 14. PMID: 28612930; PMCID: PMC5730501. |
Lawrence KE, Hernandez LM, Bookheimer SY, Dapretto M. Atypical longitudinal development of functional connectivity in adolescents with autism spectrum disorder. Autism Res. 2019 Jan;12(1):53-65. doi: 10.1002/aur.1971. Epub 2018 Oct 30. PMID: 30375176; PMCID: PMC6325013. |
He CX, Arroyo ED, Cantu DA, Goel A, Portera-Cailliau C. A Versatile Method for Viral Transfection of Calcium Indicators in the Neonatal Mouse Brain. Front Neural Circuits. 2018 Jul 23;12:56. doi: 10.3389/fncir.2018.00056. PMID: 30083093; PMCID: PMC6064716. |
Ricard C, Arroyo ED, He CX, Portera-Cailliau C, Lepousez G, Canepari M, Fiole D. Two-photon probes for in vivo multicolor microscopy of the structure and signals of brain cells. Brain Struct Funct. 2018 Sep;223(7):3011-3043. doi: 10.1007/s00429-018-1678-1. Epub 2018 May 11. PMID: 29748872; PMCID: PMC6119111. |
Arroyo ED, Fiole D, Mantri SS, Huang C, Portera-Cailliau C. Dendritic Spines in Early Postnatal Fragile X Mice Are Insensitive to Novel Sensory Experience. J Neurosci. 2019 Jan 16;39(3):412-419. doi: 10.1523/JNEUROSCI.1734-18.2018. Epub 2018 Dec 6. PMID: 30523064; PMCID: PMC6335755. |
He Q, Arroyo ED, Smukowski SN, Xu J, Piochon C, Savas JN, Portera-Cailliau C, Contractor A. Critical period inhibition of NKCC1 rectifies synapse plasticity in the somatosensory cortex and restores adult tactile response maps in fragile X mice. Mol Psychiatry. 2019 Nov;24(11):1732-1747. doi: 10.1038/s41380-018-0048-y. Epub 2018 Apr 27. PMID: 29703945; PMCID: PMC6204122. |
Cantu DA, Wang B, Gongwer MW, He CX, Goel A, Suresh A, Kourdougli N, Arroyo ED, Zeiger W, Portera-Cailliau C. EZcalcium: Open-Source Toolbox for Analysis of Calcium Imaging Data. Front Neural Circuits. 2020 May 15;14:25. doi: 10.3389/fncir.2020.00025. PMID: 32499682; PMCID: PMC7244005. |
Harrison TM, Bookheimer SY. Neuroimaging genetic risk for Alzheimer’s disease in preclinical individuals: From candidate genes to polygenic approaches. Biol Psychiatry Cogn Neurosci Neuroimaging. 2016 Jan 1;1(1):14-23. doi: 10.1016/j.bpsc.2015.09.003. PMID: 26858991; PMCID: PMC4743051. |
Harrison TM, Burggren AC, Small GW, Bookheimer SY. Altered memory-related functional connectivity of the anterior and posterior hippocampus in older adults at increased genetic risk for Alzheimer’s disease. Hum Brain Mapp. 2016 Jan;37(1):366-80. doi: 10.1002/hbm.23036. Epub 2015 Oct 27. PMID: 26503161; PMCID: PMC4715627. |
Harrison TM, Mahmood Z, Lau EP, Karacozoff AM, Burggren AC, Small GW, Bookheimer SY. An Alzheimer’s Disease Genetic Risk Score Predicts Longitudinal Thinning of Hippocampal Complex Subregions in Healthy Older Adults. eNeuro. 2016 Jul 15;3(3):ENEURO.0098-16.2016. doi: 10.1523/ENEURO.0098-16.2016. PMID: 27482534; PMCID: PMC4945997. |
Burggren AC, Mahmood Z, Harrison TM, Siddarth P, Miller KJ, Small GW, Merrill DA, Bookheimer SY. Hippocampal thinning linked to longer TOMM40 poly-T variant lengths in the absence of the APOE ε4 variant. Alzheimers Dement. 2017 Jul;13(7):739-748. doi: 10.1016/j.jalz.2016.12.009. Epub 2017 Feb 7. PMID: 28183529; PMCID: PMC5496778. |
Xin H, Lee D, Hormozdiari F, Yedkar S, Mutlu O, Alkan C. Accelerating read mapping with FastHASH. BMC Genomics. 2013;14 Suppl 1(Suppl 1):S13. doi: 10.1186/1471-2164-14-S1-S13. Epub 2013 Jan 21. PMID: 23369189; PMCID: PMC3549798. |
Hormozdiari F, Kostem E, Kang EY, Pasaniuc B, Eskin E. Identifying causal variants at loci with multiple signals of association. Genetics. 2014 Oct;198(2):497-508. doi: 10.1534/genetics.114.167908. Epub 2014 Aug 7. PMID: 25104515; PMCID: PMC4196608. |
Hormozdiari F, Kichaev G, Yang WY, Pasaniuc B, Eskin E. Identification of causal genes for complex traits. Bioinformatics. 2015 Jun 15;31(12):i206-13. doi: 10.1093/bioinformatics/btv240. PMID: 26072484; PMCID: PMC4542778. |
Won H, de la Torre-Ubieta L, Stein JL, Parikshak NN, Huang J, Opland CK, Gandal MJ, Sutton GJ, Hormozdiari F, Lu D, Lee C, Eskin E, Voineagu I, Ernst J, Geschwind DH. Chromosome conformation elucidates regulatory relationships in developing human brain. Nature. 2016 Oct 27;538(7626):523-527. doi: 10.1038/nature19847. Epub 2016 Oct 19. PMID: 27760116; PMCID: PMC5358922. |
Hormozdiari F, van de Bunt M, Segrè AV, Li X, Joo JWJ, Bilow M, Sul JH, Sankararaman S, Pasaniuc B, Eskin E. Colocalization of GWAS and eQTL Signals Detects Target Genes. Am J Hum Genet. 2016 Dec 1;99(6):1245-1260. doi: 10.1016/j.ajhg.2016.10.003. Epub 2016 Nov 17. PMID: 27866706; PMCID: PMC5142122. |
Voineagu I, Huang L, Winden K, Lazaro M, Haan E, Nelson J, McGaughran J, Nguyen LS, Friend K, Hackett A, Field M, Gecz J, Geschwind D. CCDC22: a novel candidate gene for syndromic X-linked intellectual disability. Mol Psychiatry. 2012 Jan;17(1):4-7. doi: 10.1038/mp.2011.95. Epub 2011 Aug 9. PMID: 21826058; PMCID: PMC3586744. |
Garcia-Junco-Clemente P, Chow DK, Tring E, Lazaro MT, Trachtenberg JT, Golshani P. Overexpression of calcium-activated potassium channels underlies cortical dysfunction in a model of PTEN-associated autism. Proc Natl Acad Sci U S A. 2013 Nov 5;110(45):18297-302. doi: 10.1073/pnas.1309207110. Epub 2013 Oct 21. PMID: 24145404; PMCID: PMC3831440. |
Peñagarikano O, Lazaro MT, Lu XH, Gordon A, Dong H, Lam HA, Peles E, Maidment NT, Murphy NP, Yang XW, Golshani P, Geschwind DH. Exogenous and evoked oxytocin restores social behavior in the Cntnap2 mouse model of autism. Sci Transl Med. 2015 Jan 21;7(271):271ra8. doi: 10.1126/scitranslmed.3010257. PMID: 25609168; PMCID: PMC4498455. |
Lazaro MT, Golshani P. The utility of rodent models of autism spectrum disorders. Curr Opin Neurol. 2015 Apr;28(2):103-9. doi: 10.1097/WCO.0000000000000183. PMID: 25734952; PMCID: PMC4476903. |
Gdalyahu A, Lazaro M, Penagarikano O, Golshani P, Trachtenberg JT, Geschwind DH. The Autism Related Protein Contactin-Associated Protein-Like 2 (CNTNAP2) Stabilizes New Spines: An In Vivo Mouse Study. PLoS One. 2015 May 7;10(5):e0125633. doi: 10.1371/journal.pone.0125633. Erratum in: PLoS One. 2015;10(5):e0129638. Gescwind, Daniel H [corrected to Geschwind, Daniel H]. PMID: 25951243; PMCID: PMC4423902. |
Lazaro MT, Taxidis J, Shuman T, Bachmutsky I, Ikrar T, Santos R, Marcello GM, Mylavarapu A, Chandra S, Foreman A, Goli R, Tran D, Sharma N, Azhdam M, Dong H, Choe KY, Peñagarikano O, Masmanidis SC, Rácz B, Xu X, Geschwind DH, Golshani P. Reduced Prefrontal Synaptic Connectivity and Disturbed Oscillatory Population Dynamics in the CNTNAP2 Model of Autism. Cell Rep. 2019 May 28;27(9):2567-2578.e6. doi: 10.1016/j.celrep.2019.05.006. PMID: 31141683; PMCID: PMC6553483. |
Williams ME, Wilke SA, Daggett A, Davis E, Otto S, Ravi D, Ripley B, Bushong EA, Ellisman MH, Klein G, Ghosh A. Cadherin-9 regulates synapse-specific differentiation in the developing hippocampus. Neuron. 2011 Aug 25;71(4):640-55. doi: 10.1016/j.neuron.2011.06.019. PMID: 21867881; PMCID: PMC3272880. |
Daggett A, Yang XW. Huntington’s disease: easing the NMDAR traffic jam. Nat Med. 2013 Aug;19(8):971-3. doi: 10.1038/nm.3283. PMID: 23921742. |
Thomason ME, Dennis EL, Joshi AA, Joshi SH, Dinov ID, Chang C, Henry ML, Johnson RF, Thompson PM, Toga AW, Glover GH, Van Horn JD, Gotlib IH. Resting-state fMRI can reliably map neural networks in children. Neuroimage. 2011 Mar 1;55(1):165-75. doi: 10.1016/j.neuroimage.2010.11.080. Epub 2010 Dec 4. PMID: 21134471; PMCID: PMC3031732. |
Dennis EL, Jahanshad N, Rudie JD, Brown JA, Johnson K, McMahon KL, de Zubicaray GI, Montgomery G, Martin NG, Wright MJ, Bookheimer SY, Dapretto M, Toga AW, Thompson PM. Altered structural brain connectivity in healthy carriers of the autism risk gene, CNTNAP2. Version 2. Brain Connect. 2011;1(6):447-59. doi: 10.1089/brain.2011.0064. Erratum in: Brain Connect. 2012;2(6):356. PMID: 22500773; PMCID: PMC3420970. |
Dennis EL, Gotlib IH, Thompson PM, Thomason ME. Anxiety modulates insula recruitment in resting-state functional magnetic resonance imaging in youth and adults. Brain Connect. 2011;1(3):245-54. doi: 10.1089/brain.2011.0030. PMID: 22433052; PMCID: PMC3621677. |
Daianu M, Jahanshad N, Dennis EL, Toga AW, McMahon KL, de Zubicaray GI, Martin NG, Wright MJ, Hickie IB, Thompson PM. LEFT VERSUS RIGHT HEMISPHERE DIFFERENCES IN BRAIN CONNECTIVITY: 4-TESLA HARDI TRACTOGRAPHY IN 569 TWINS. Proc IEEE Int Symp Biomed Imaging. 2012 May;2012:526-529. doi: 10.1109/ISBI.2012.6235601. PMID: 25404993; PMCID: PMC4232939. |
Rudie JD, Brown JA, Beck-Pancer D, Hernandez LM, Dennis EL, Thompson PM, Bookheimer SY, Dapretto M. Altered functional and structural brain network organization in autism. Neuroimage Clin. 2012 Nov 16;2:79-94. doi: 10.1016/j.nicl.2012.11.006. PMID: 24179761; PMCID: PMC3777708. |
Dennis EL, Jahanshad N, Toga AW, McMahon KL, de Zubicaray GI, Martin NG, Wright MJ, Thompson PM. Test-retest reliability of graph theory measures of structural brain connectivity. Med Image Comput Comput Assist Interv. 2012;15(Pt 3):305-12. doi: 10.1007/978-3-642-33454-2_38. PMID: 23286144; PMCID: PMC4039303. |
Dennis EL, Jahanshad N, Toga AW, Johnson K, McMahon KL, de Zubicaray GI, Martin NG, Hickie IB, Wright MJ, Thompson PM. CHANGES IN ANATOMICAL BRAIN CONNECTIVITY BETWEEN AGES 12 AND 30: A HARDI STUDY OF 467 ADOLESCENTS AND ADULTS. Proc IEEE Int Symp Biomed Imaging. 2012:904-908. doi: 10.1109/ISBI.2012.6235695. PMID: 22903354; PMCID: PMC3420974. |
Dennis EL, Jahanshad N, McMahon KL, de Zubicaray GI, Martin NG, Hickie IB, Toga AW, Wright MJ, Thompson PM. Development of brain structural connectivity between ages 12 and 30: a 4-Tesla diffusion imaging study in 439 adolescents and adults. Neuroimage. 2013 Jan 1;64:671-84. doi: 10.1016/j.neuroimage.2012.09.004. Epub 2012 Sep 14. PMID: 22982357; PMCID: PMC3603574. |
Dennis EL, Thompson PM. Mapping connectivity in the developing brain. Int J Dev Neurosci. 2013 Nov;31(7):525-42. doi: 10.1016/j.ijdevneu.2013.05.007. Epub 2013 May 27. PMID: 23722009; PMCID: PMC3800504. |
Dennis EL, Thompson PM. Typical and atypical brain development: a review of neuroimaging studies. Dialogues Clin Neurosci. 2013 Sep;15(3):359-84. PMID: 24174907; PMCID: PMC3811107. |
Dennis EL, Jahanshad N, Toga AW, McMahon KL, de Zubicaray GI, Hickie I, Wright MJ, Thompson PM. DEVELOPMENT OF THE “RICH CLUB” IN BRAIN CONNECTIVITY NETWORKS FROM 438 ADOLESCENTS & ADULTS AGED 12 TO 30. Proc IEEE Int Symp Biomed Imaging. 2013:624-627. doi: 10.1109/ISBI.2013.6556552. PMID: 24827471; PMCID: PMC4017916. |
Daianu M, Dennis EL, Jahanshad N, Nir TM, Toga AW, Jack CR Jr, Weiner MW, Thompson PM; the Alzheimer’s Disease Neuroimaging Initiative. Alzheimer’s Disease Disrupts Rich Club Organization in Brain Connectivity Networks. Proc IEEE Int Symp Biomed Imaging. 2013:266-269. doi: 10.1109/ISBI.2013.6556463. PMID: 24953139; PMCID: PMC4063983. |
Dennis EL, Thompson PM. Functional brain connectivity using fMRI in aging and Alzheimer’s disease. Neuropsychol Rev. 2014 Mar;24(1):49-62. doi: 10.1007/s11065-014-9249-6. Epub 2014 Feb 23. PMID: 24562737; PMCID: PMC4109887. |
Dennis EL, Jahanshad N, McMahon KL, de Zubicaray GI, Martin NG, Hickie IB, Toga AW, Wright MJ, Thompson PM. Development of insula connectivity between ages 12 and 30 revealed by high angular resolution diffusion imaging. Hum Brain Mapp. 2014 Apr;35(4):1790-800. doi: 10.1002/hbm.22292. Epub 2013 Jul 8. PMID: 23836455; PMCID: PMC4017914. |
Dennis EL, Jahanshad N, Braskie MN, Warstadt NM, Hibar DP, Kohannim O, Nir TM, McMahon KL, de Zubicaray GI, Montgomery GW, Martin NG, Toga AW, Wright MJ, Thompson PM. Obesity gene NEGR1 associated with white matter integrity in healthy young adults. Neuroimage. 2014 Nov 15;102 Pt 2(0 2):548-57. doi: 10.1016/j.neuroimage.2014.07.041. Epub 2014 Jul 27. PMID: 25072390; PMCID: PMC4269485. |
Warstadt NM, Dennis EL, Jahanshad N, Kohannim O, Nir TM, McMahon KL, de Zubicaray GI, Montgomery GW, Henders AK, Martin NG, Whitfield JB, Jack CR Jr, Bernstein MA, Weiner MW, Toga AW, Wright MJ, Thompson PM; Alzheimer’s Disease Neuroimaging Initiative (ADNI). Serum cholesterol and variant in cholesterol-related gene CETP predict white matter microstructure. Neurobiol Aging. 2014 Nov;35(11):2504-2513. doi: 10.1016/j.neurobiolaging.2014.05.024. Epub 2014 Jun 2. PMID: 24997672; PMCID: PMC4198330. |
Dennis EL, Jin Y, Villalon-Reina JE, Zhan L, Kernan CL, Babikian T, Mink RB, Babbitt CJ, Johnson JL, Giza CC, Thompson PM, Asarnow RF. White matter disruption in moderate/severe pediatric traumatic brain injury: advanced tract-based analyses. Neuroimage Clin. 2015 Feb 12;7:493-505. doi: 10.1016/j.nicl.2015.02.002. PMID: 25737958; PMCID: PMC4338205. |
Han A, Stoilov P, Linares AJ, Zhou Y, Fu XD, Black DL. De novo prediction of PTBP1 binding and splicing targets reveals unexpected features of its RNA recognition and function. PLoS Comput Biol. 2014 Jan 30;10(1):e1003442. doi: 10.1371/journal.pcbi.1003442. PMID: 24499931; PMCID: PMC3907290. |
Yeom KH, Mitchell S, Linares AJ, Zheng S, Lin CH, Wang XJ, Hoffmann A, Black DL. Polypyrimidine tract-binding protein blocks miRNA-124 biogenesis to enforce its neuronal-specific expression in the mouse. Proc Natl Acad Sci U S A. 2018 Nov 20;115(47):E11061-E11070. doi: 10.1073/pnas.1809609115. PMID: 30401736; PMCID: PMC6255174. |
Fogel BL, Wexler E, Wahnich A, Friedrich T, Vijayendran C, Gao F, Parikshak N, Konopka G, Geschwind DH. RBFOX1 regulates both splicing and transcriptional networks in human neuronal development. Hum Mol Genet. 2012 Oct 1;21(19):4171-86. doi: 10.1093/hmg/dds240. Epub 2012 Jun 23. PMID: 22730494; PMCID: PMC3441119. |
Sanders SJ, Murtha MT, Gupta AR, Murdoch JD, Raubeson MJ, Willsey AJ, Ercan-Sencicek AG, DiLullo NM, Parikshak NN, Stein JL, Walker MF, Ober GT, Teran NA, Song Y, El-Fishawy P, Murtha RC, Choi M, Overton JD, Bjornson RD, Carriero NJ, Meyer KA, Bilguvar K, Mane SM, Sestan N, Lifton RP, Günel M, Roeder K, Geschwind DH, Devlin B, State MW. De novo mutations revealed by whole-exome sequencing are strongly associated with autism. Nature. 2012 Apr 4;485(7397):237-41. doi: 10.1038/nature10945. PMID: 22495306; PMCID: PMC3667984. |
Furlotte NA, Kang EY, Van Nas A, Farber CR, Lusis AJ, Eskin E. Increasing association mapping power and resolution in mouse genetic studies through the use of meta-analysis for structured populations. Genetics. 2012 Jul;191(3):959-67. doi: 10.1534/genetics.112.140277. Epub 2012 Apr 13. PMID: 22505625; PMCID: PMC3389987. |
Furlotte NA, Eskin E, Eyheramendy S. Genome-wide association mapping with longitudinal data. Genet Epidemiol. 2012 Jul;36(5):463-71. doi: 10.1002/gepi.21640. Epub 2012 May 11. PMID: 22581622; PMCID: PMC3625633. |
Kang EY, Han B, Furlotte N, Joo JW, Shih D, Davis RC, Lusis AJ, Eskin E. Meta-analysis identifies gene-by-environment interactions as demonstrated in a study of 4,965 mice. PLoS Genet. 2014 Jan;10(1):e1004022. doi: 10.1371/journal.pgen.1004022. Epub 2014 Jan 9. PMID: 24415945; PMCID: PMC3886926. |
Furlotte NA, Eskin E. Efficient multiple-trait association and estimation of genetic correlation using the matrix-variate linear mixed model. Genetics. 2015 May;200(1):59-68. doi: 10.1534/genetics.114.171447. Epub 2015 Feb 27. PMID: 25724382; PMCID: PMC4423381. |
Bennett BJ, Farber CR, Orozco L, Kang HM, Ghazalpour A, Siemers N, Neubauer M, Neuhaus I, Yordanova R, Guan B, Truong A, Yang WP, He A, Kayne P, Gargalovic P, Kirchgessner T, Pan C, Castellani LW, Kostem E, Furlotte N, Drake TA, Eskin E, Lusis AJ. A high-resolution association mapping panel for the dissection of complex traits in mice. Genome Res. 2010 Feb;20(2):281-90. doi: 10.1101/gr.099234.109. Epub 2010 Jan 6. PMID: 20054062; PMCID: PMC2813484. |
Kirby A, Kang HM, Wade CM, Cotsapas C, Kostem E, Han B, Furlotte N, Kang EY, Rivas M, Bogue MA, Frazer KA, Johnson FM, Beilharz EJ, Cox DR, Eskin E, Daly MJ. Fine mapping in 94 inbred mouse strains using a high-density haplotype resource. Genetics. 2010 Jul;185(3):1081-95. doi: 10.1534/genetics.110.115014. Epub 2010 May 3. PMID: 20439770; PMCID: PMC2907194. |
Farber CR, Bennett BJ, Orozco L, Zou W, Lira A, Kostem E, Kang HM, Furlotte N, Berberyan A, Ghazalpour A, Suwanwela J, Drake TA, Eskin E, Wang QT, Teitelbaum SL, Lusis AJ. Mouse genome-wide association and systems genetics identify Asxl2 as a regulator of bone mineral density and osteoclastogenesis. PLoS Genet. 2011 Apr;7(4):e1002038. doi: 10.1371/journal.pgen.1002038. Epub 2011 Apr 7. PMID: 21490954; PMCID: PMC3072371. |
Kostem E, Lozano JA, Eskin E. Increasing power of genome-wide association studies by collecting additional single-nucleotide polymorphisms. Genetics. 2011 Jun;188(2):449-60. doi: 10.1534/genetics.111.128595. Epub 2011 Apr 5. PMID: 21467568; PMCID: PMC3122306. |
Bennett BJ, Orozco L, Kostem E, Erbilgin A, Dallinga M, Neuhaus I, Guan B, Wang X, Eskin E, Lusis AJ. High-resolution association mapping of atherosclerosis loci in mice. Arterioscler Thromb Vasc Biol. 2012 Aug;32(8):1790-8. doi: 10.1161/ATVBAHA.112.253864. Epub 2012 Jun 21. PMID: 22723443; PMCID: PMC3519423. |
Ghazalpour A, Rau CD, Farber CR, Bennett BJ, Orozco LD, van Nas A, Pan C, Allayee H, Beaven SW, Civelek M, Davis RC, Drake TA, Friedman RA, Furlotte N, Hui ST, Jentsch JD, Kostem E, Kang HM, Kang EY, Joo JW, Korshunov VA, Laughlin RE, Martin LJ, Ohmen JD, Parks BW, Pellegrini M, Reue K, Smith DJ, Tetradis S, Wang J, Wang Y, Weiss JN, Kirchgessner T, Gargalovic PS, Eskin E, Lusis AJ, LeBoeuf RC. Hybrid mouse diversity panel: a panel of inbred mouse strains suitable for analysis of complex genetic traits. Mamm Genome. 2012 Oct;23(9-10):680-92. doi: 10.1007/s00335-012-9411-5. Epub 2012 Aug 15. PMID: 22892838; PMCID: PMC3586763. |
Parks BW, Nam E, Org E, Kostem E, Norheim F, Hui ST, Pan C, Civelek M, Rau CD, Bennett BJ, Mehrabian M, Ursell LK, He A, Castellani LW, Zinker B, Kirby M, Drake TA, Drevon CA, Knight R, Gargalovic P, Kirchgessner T, Eskin E, Lusis AJ. Genetic control of obesity and gut microbiota composition in response to high-fat, high-sucrose diet in mice. Cell Metab. 2013 Jan 8;17(1):141-52. doi: 10.1016/j.cmet.2012.12.007. PMID: 23312289; PMCID: PMC3545283. |
Kostem E, Eskin E. Improving the accuracy and efficiency of partitioning heritability into the contributions of genomic regions. Am J Hum Genet. 2013 Apr 4;92(4):558-64. doi: 10.1016/j.ajhg.2013.03.010. PMID: 23561845; PMCID: PMC3617385. |
Kostem E, Eskin E. Efficiently identifying significant associations in genome-wide association studies. J Comput Biol. 2013 Oct;20(10):817-30. doi: 10.1089/cmb.2013.0087. Epub 2013 Sep 14. PMID: 24033261; PMCID: PMC3791046. |
Leikauf GD, Concel VJ, Bein K, Liu P, Berndt A, Martin TM, Ganguly K, Jang AS, Brant KA, Dopico RA Jr, Upadhyay S, Cario C, Di YP, Vuga LJ, Kostem E, Eskin E, You M, Kaminski N, Prows DR, Knoell DL, Fabisiak JP. Functional genomic assessment of phosgene-induced acute lung injury in mice. Am J Respir Cell Mol Biol. 2013 Sep;49(3):368-83. doi: 10.1165/rcmb.2012-0337OC. PMID: 23590305; PMCID: PMC3824050. |
Ho VM, Lee JA, Martin KC. The cell biology of synaptic plasticity. Science. 2011 Nov 4;334(6056):623-8. doi: 10.1126/science.1209236. PMID: 22053042; PMCID: PMC3286636. |
Ho VM, Dallalzadeh LO, Karathanasis N, Keles MF, Vangala S, Grogan T, Poirazi P, Martin KC. GluA2 mRNA distribution and regulation by miR-124 in hippocampal neurons. Mol Cell Neurosci. 2014 Jul;61:1-12. doi: 10.1016/j.mcn.2014.04.006. Epub 2014 Apr 28. PMID: 24784359; PMCID: PMC4134974. |
Cummings DM, André VM, Uzgil BO, Gee SM, Fisher YE, Cepeda C, Levine MS. Alterations in cortical excitation and inhibition in genetic mouse models of Huntington’s disease. Version 2. J Neurosci. 2009 Aug 19;29(33):10371-86. doi: 10.1523/JNEUROSCI.1592-09.2009. PMID: 19692612; PMCID: PMC2754238. |
Ch’ng TH, Uzgil B, Lin P, Avliyakulov NK, O’Dell TJ, Martin KC. Activity-dependent transport of the transcriptional coactivator CRTC1 from synapse to nucleus. Cell. 2012 Jul 6;150(1):207-21. doi: 10.1016/j.cell.2012.05.027. PMID: 22770221; PMCID: PMC4037152. |
Cummings DM, André VM, Uzgil BO, Gee SM, Fisher YE, Cepeda C, Levine MS. Alterations in cortical excitation and inhibition in genetic mouse models of Huntington’s disease. Version 2. J Neurosci. 2009 Aug 19;29(33):10371-86. doi: 10.1523/JNEUROSCI.1592-09.2009. PMID: 19692612; PMCID: PMC2754238. |
Scott-Van Zeeland AA, Abrahams BS, Alvarez-Retuerto AI, Sonnenblick LI, Rudie JD, Ghahremani D, Mumford JA, Poldrack RA, Dapretto M, Geschwind DH, Bookheimer SY. Altered functional connectivity in frontal lobe circuits is associated with variation in the autism risk gene CNTNAP2. Sci Transl Med. 2010 Nov 3;2(56):56ra80. doi: 10.1126/scitranslmed.3001344. PMID: 21048216; PMCID: PMC3065863. |
Dennis EL, Jahanshad N, Rudie JD, Brown JA, Johnson K, McMahon KL, de Zubicaray GI, Montgomery G, Martin NG, Wright MJ, Bookheimer SY, Dapretto M, Toga AW, Thompson PM. Altered structural brain connectivity in healthy carriers of the autism risk gene, CNTNAP2. Version 2. Brain Connect. 2011;1(6):447-59. doi: 10.1089/brain.2011.0064. Erratum in: Brain Connect. 2012;2(6):356. PMID: 22500773; PMCID: PMC3420970. |
Colich NL, Wang AT, Rudie JD, Hernandez LM, Bookheimer SY, Dapretto M. Atypical Neural Processing of Ironic and Sincere Remarks in Children and Adolescents with Autism Spectrum Disorders. Metaphor Symb. 2012;27(1):70-92. doi: 10.1080/10926488.2012.638856. PMID: 24497750; PMCID: PMC3909704. |
Rudie JD, Brown JA, Beck-Pancer D, Hernandez LM, Dennis EL, Thompson PM, Bookheimer SY, Dapretto M. Altered functional and structural brain network organization in autism. Neuroimage Clin. 2012 Nov 16;2:79-94. doi: 10.1016/j.nicl.2012.11.006. PMID: 24179761; PMCID: PMC3777708. |
Pfeifer JH, Merchant JS, Colich NL, Hernandez LM, Rudie JD, Dapretto M. Neural and behavioral responses during self-evaluative processes differ in youth with and without autism. J Autism Dev Disord. 2013 Feb;43(2):272-85. doi: 10.1007/s10803-012-1563-3. PMID: 22760337; PMCID: PMC3507334. |
Rudie JD, Dapretto M. Convergent evidence of brain overconnectivity in children with autism? Cell Rep. 2013 Nov 14;5(3):565-6. doi: 10.1016/j.celrep.2013.10.043. PMID: 24238089; PMCID: PMC6396279. |
Green SA, Rudie JD, Colich NL, Wood JJ, Shirinyan D, Hernandez L, Tottenham N, Dapretto M, Bookheimer SY. Overreactive brain responses to sensory stimuli in youth with autism spectrum disorders. J Am Acad Child Adolesc Psychiatry. 2013 Nov;52(11):1158-72. doi: 10.1016/j.jaac.2013.08.004. Epub 2013 Aug 24. PMID: 24157390; PMCID: PMC3820504. |
Sherman LE, Rudie JD, Pfeifer JH, Masten CL, McNealy K, Dapretto M. Development of the default mode and central executive networks across early adolescence: a longitudinal study. Version 2. Dev Cogn Neurosci. 2014 Oct;10:148-59. doi: 10.1016/j.dcn.2014.08.002. Epub 2014 Aug 20. PMID: 25282602; PMCID: PMC4854607. |
Hernandez LM, Rudie JD, Green SA, Bookheimer S, Dapretto M. Neural signatures of autism spectrum disorders: insights into brain network dynamics. Neuropsychopharmacology. 2015 Jan;40(1):171-89. doi: 10.1038/npp.2014.172. Epub 2014 Jul 11. PMID: 25011468; PMCID: PMC4262896. |
Wilburn B, Rudnicki DD, Zhao J, Weitz TM, Cheng Y, Gu X, Greiner E, Park CS, Wang N, Sopher BL, La Spada AR, Osmand A, Margolis RL, Sun YE, Yang XW. An antisense CAG repeat transcript at JPH3 locus mediates expanded polyglutamine protein toxicity in Huntington’s disease-like 2 mice. Neuron. 2011 May 12;70(3):427-40. doi: 10.1016/j.neuron.2011.03.021. PMID: 21555070; PMCID: PMC3107122. |
Cui Y, Ostlund SB, James AS, Park CS, Ge W, Roberts KW, Mittal N, Murphy NP, Cepeda C, Kieffer BL, Levine MS, Jentsch JD, Walwyn WM, Sun YE, Evans CJ, Maidment NT, Yang XW. Targeted expression of μ-opioid receptors in a subset of striatal direct-pathway neurons restores opiate reward. Nat Neurosci. 2014 Feb;17(2):254-61. doi: 10.1038/nn.3622. Epub 2014 Jan 12. PMID: 24413699; PMCID: PMC4008330. |
Gu X, Cantle JP, Greiner ER, Lee CY, Barth AM, Gao F, Park CS, Zhang Z, Sandoval-Miller S, Zhang RL, Diamond M, Mody I, Coppola G, Yang XW. N17 Modifies mutant Huntingtin nuclear pathogenesis and severity of disease in HD BAC transgenic mice. Neuron. 2015 Feb 18;85(4):726-41. doi: 10.1016/j.neuron.2015.01.008. Epub 2015 Feb 5. PMID: 25661181; PMCID: PMC4386927. |
Rosen EY, Wexler EM, Versano R, Coppola G, Gao F, Winden KD, Oldham MC, Martens LH, Zhou P, Farese RV Jr, Geschwind DH. Functional genomic analyses identify pathways dysregulated by progranulin deficiency, implicating Wnt signaling. Neuron. 2011 Sep 22;71(6):1030-42. doi: 10.1016/j.neuron.2011.07.021. Epub 2011 Sep 21. PMID: 21943601; PMCID: PMC3633414. |
Wexler EM, Rosen E, Lu D, Osborn GE, Martin E, Raybould H, Geschwind DH. Genome-wide analysis of a Wnt1-regulated transcriptional network implicates neurodegenerative pathways. Sci Signal. 2011 Oct 4;4(193):ra65. doi: 10.1126/scisignal.2002282. PMID: 21971039; PMCID: PMC3856943. |
Publications by Postdoctoral Trainees
Border R, Athanasiadis G, Buil A, Schork AJ, Cai N, Young AI, Werge T, Flint J, Kendler KS, Sankararaman S, Dahl AW, Zaitlen NA. Cross-trait assortative mating is widespread and inflates genetic correlation estimates. Science. 2022 Nov 18;378(6621):754-761. doi: 10.1126/science.abo2059. Epub 2022 Nov 17. PMID: 36395242. |
Hoftman GD, Bazmi HH, Ciesielski AJ, Dinka LA, Chen K, Lewis DA. Postnatal Development of Glutamate and GABA Transcript Expression in Monkey Visual, Parietal, and Prefrontal Cortices. Cerebral cortex (New York, N.Y. : 1991). 2021 March 5;31(4):2026-2037. PubMed PMID: 33279960; PubMed Central PMCID: PMC8248841; DOI: 10.1093/cercor/bhaa342. |
Geschwind D, Wamsley B. Functional Genomics links Genetic Origins to Pathophysiology in Neurodegenerative and Neuropsychiatric Disease. Curr Opin Genet Dev. Forthcoming 2020. |
Jung SY, Mancuso N, Yu H, Papp J, Sobel E, Zhang ZF. Genome-Wide Meta-analysis of Gene-Environmental Interaction for Insulin Resistance Phenotypes and Breast Cancer Risk in Postmenopausal Women. Cancer Prev Res (Phila). 2019 Jan;12(1):31-42. Doi: 10.1158/1940-6207.CAPR-18-0180. Epub 2018 Oct 16. PMID: 30327367. |
Mancuso N, Gayther S, Gusev A, Zheng W, Penney KL; PRACTICAL consortium, Kote-Jarai Z, Eeles R, Freedman M, Haiman C, Pasaniuc B. Author Correction: Large-scale transcriptome-wide association study identifies new prostate cancer risk regions. Nat Commun. 2019 Jan 8;10(1):171. Doi: 10.1038/s41467-018-08108-7. Erratum for: Nat Commun. 2018 Oct 4;9(1):4079. PMID: 30622272; PMCID: PMC6325152. |
Mancuso N, Freund MK, Johnson R, Shi H, Kichaev G, Gusev A, Pasaniuc B. Probabilistic fine-mapping of transcriptome-wide association studies. Nat Genet. 2019 Apr;51(4):675-682. Doi: 10.1038/s41588-019-0367-1. Epub 2019 Mar 29. PMID: 30926970; PMCID: PMC6619422. |
Wainberg M, Sinnott-Armstrong N, Mancuso N, Barbeira AN, Knowles DA, Golan D, Ermel R, Ruusalepp A, Quertermous T, Hao K, Björkegren JLM, Im HK, Pasaniuc B, Rivas MA, Kundaje A. Opportunities and challenges for transcriptome-wide association studies. Nat Genet. 2019 Apr;51(4):592-599. Doi: 10.1038/s41588-019-0385-z. Epub 2019 Mar 29. PMID: 30926968; PMCID: PMC6777347. |
Major M, Freund MK, Burch KS, Mancuso N, Ng M, Furniss D, Pasaniuc B, Ophoff RA. Integrative analysis of Dupuytren’s disease identifies novel risk locus and reveals a shared genetic etiology with BMI. Genet Epidemiol. 2019 Sep;43(6):629-645. Doi: 10.1002/gepi.22209. Epub 2019 May 13. PMID: 31087417; PMCID: PMC6699495. |
Hou K, Burch KS, Majumdar A, Shi H, Mancuso N, Wu Y, Sankararaman S, Pasaniuc B. Accurate estimation of SNP-heritability from biobank-scale data irrespective of genetic architecture. Nat Genet. 2019 Aug;51(8):1244-1251. Doi: 10.1038/s41588-019-0465-0. Epub 2019 Jul 29. PMID: 31358995; PMCID: PMC6686906. |
Walker RL, Ramaswami G, Hartl C, Mancuso N, Gandal MJ, de la Torre-Ubieta L, Pasaniuc B, Stein JL, Geschwind DH. Genetic Control of Expression and Splicing in Developing Human Brain Informs Disease Mechanisms. Cell. 2019 Oct 17;179(3):750-771.e22. doi: 10.1016/j.cell.2019.09.021. PMID: 31626773. PMCID in progress |
Chen P, Hong W. Neural Circuit Mechanisms of Social Behavior. Neuron. 2018 Apr 4;98(1):16-30. Doi: 10.1016/j.neuron.2018.02.026. PMID: 29621486; PMCID: PMC6028944. |
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